Protein Info for AZOBR_RS29880 in Azospirillum brasilense Sp245

Annotation: flagellin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 PF00669: Flagellin_N" amino acids 4 to 135 (132 residues), 80.8 bits, see alignment E=1.1e-26 PF00700: Flagellin_C" amino acids 341 to 413 (73 residues), 66.6 bits, see alignment E=2.1e-22

Best Hits

KEGG orthology group: K02406, flagellin (inferred from 86% identity to azl:AZL_e01020)

Predicted SEED Role

"Flagellin protein FlaA" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AYX9 at UniProt or InterPro

Protein Sequence (414 amino acids)

>AZOBR_RS29880 flagellin (Azospirillum brasilense Sp245)
MASIMTNTSAMTALQTLRRVTDDLATTQDRISTGLKVNNAKDNAAYWSIATTMRADVAGF
KAVKESLELGSGTTNTASVASKNIVENLQTLKARVIAGQTNGVDKSLIQNDIDQLVKLVK
GAAADASFNGDNLLRITYSNDGTAKDQNVDILASLSRSAGTVDPSYISFQRQDMQVTSIV
GKATIEQQVDSTNDLKASVGIAIGAPDTTFIDGQNLGLGNLTLNVTNEAGTKTAVTVDLS
GIDYTTDLATTQGLIETAVNTALTAAGGDFQVAFNGDKLEFTDQDLNTDGNFTAKVDSLW
VGSKESDAFGGLADLTQIDVTSNATKSLEVINGLLDKAIGKAAVIGSIENRVSVQNDFVS
KLTDSMNKGIGSLVDADMNEESSRLQALQVQQQLATQALSIANQGPQNILSLFR