Protein Info for AZOBR_RS29345 in Azospirillum brasilense Sp245

Annotation: phosphate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 268 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 78 to 101 (24 residues), see Phobius details amino acids 122 to 148 (27 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 239 to 261 (23 residues), see Phobius details TIGR01097: phosphonate ABC transporter, permease protein PhnE" amino acids 21 to 264 (244 residues), 261.9 bits, see alignment E=3e-82 PF00528: BPD_transp_1" amino acids 93 to 264 (172 residues), 69 bits, see alignment E=2.2e-23

Best Hits

Swiss-Prot: 47% identical to PTXC_PSEST: Phosphite transport system permease protein PtxC (ptxC) from Pseudomonas stutzeri

KEGG orthology group: K02042, phosphonate transport system permease protein (inferred from 66% identity to rpa:RPA1384)

Predicted SEED Role

"Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1)" in subsystem ABC transporter alkylphosphonate (TC 3.A.1.9.1) (TC 3.A.1.9.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AYQ1 at UniProt or InterPro

Protein Sequence (268 amino acids)

>AZOBR_RS29345 phosphate ABC transporter permease (Azospirillum brasilense Sp245)
LNAADLDSVVEDGRRRAGKTLAQVLLTVLLVLGAFAYTGGLSAERYRGAVTTILTLVGES
LPPDFSRWSNWGRPLLETLAMSVAGTALGTVAGLALGALAARNTTPRWLHEPVRLLLNTA
RSIPGLVWGVLFVASVGFGPLPGVFALAGHSTGVLGKLYAEILEHVDPGPGNALRSQGVS
PLGVLRFSLWPQIMPRIVDVTLYRWEHNLRAATTLGVVGAGGLGLEVVTAFHLFEYREAL
ALILVMLALVTLINVAGAAIRGHLLHGA