Protein Info for AZOBR_RS29240 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 PF02492: cobW" amino acids 4 to 163 (160 residues), 38 bits, see alignment E=6.6e-14

Best Hits

Swiss-Prot: 48% identical to Y120_METJA: Uncharacterized protein MJ0120 (MJ0120) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: None (inferred from 70% identity to rpa:RPA1390)

Predicted SEED Role

"Ni2+-binding GTPase involved in regulation of expression and maturation of hydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AYM9 at UniProt or InterPro

Protein Sequence (234 amino acids)

>AZOBR_RS29240 hypothetical protein (Azospirillum brasilense Sp245)
MRLITVAGPPSVGKTSVIVRALRHLIAGGLRAGVIKFDALDTADDALYRRAGIPVAVGLS
HGICPDHFFVSNIDDARAWGQSQGLDALVSESAGLCNRCSPHIREVLAVCVVDVLSGVQT
PRKIGPMLRLADLVLITKGDIVSQAEREVFAYHVALANPRAAVLFVNGITGQGSVAFANR
IRHAGDTGALEGRRLRFPMPSAVCPYCVGETCIGVDHQRGHVRKIAFETPEVPP