Protein Info for AZOBR_RS27960 in Azospirillum brasilense Sp245

Annotation: multidrug ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 915 transmembrane" amino acids 572 to 590 (19 residues), see Phobius details amino acids 720 to 743 (24 residues), see Phobius details amino acids 771 to 793 (23 residues), see Phobius details amino acids 799 to 820 (22 residues), see Phobius details amino acids 828 to 846 (19 residues), see Phobius details amino acids 889 to 910 (22 residues), see Phobius details PF00005: ABC_tran" amino acids 30 to 177 (148 residues), 97.3 bits, see alignment E=3.2e-31 amino acids 294 to 437 (144 residues), 105.2 bits, see alignment E=1.2e-33 PF13304: AAA_21" amino acids 144 to 201 (58 residues), 29.2 bits, see alignment 2.3e-10 PF12698: ABC2_membrane_3" amino acids 576 to 907 (332 residues), 136 bits, see alignment E=4.3e-43 PF12679: ABC2_membrane_2" amino acids 706 to 882 (177 residues), 30.2 bits, see alignment E=7.1e-11 PF01061: ABC2_membrane" amino acids 725 to 878 (154 residues), 45.7 bits, see alignment E=1.5e-15

Best Hits

KEGG orthology group: K13926, ribosome-dependent ATPase (inferred from 69% identity to atu:Atu4667)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AXT5 at UniProt or InterPro

Protein Sequence (915 amino acids)

>AZOBR_RS27960 multidrug ABC transporter ATP-binding protein (Azospirillum brasilense Sp245)
MSGAADRSAASPVARLRDVRLVYKKIRAIDGVSLDVPAGRVSGLIGPDGVGKSSLLSLMS
GARALQEGTVEVLGGSMAEARHRRAVCPRIAYMPQGLGKTLYPTLSIAENLDFFGRLFGQ
GRAERQRRIADLTQSTGLAPFLDRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVD
PLSRRQFWELIDRIRADRPGMSVVVATAYMEEAARFDWLVAMDEGRVLATGSPRDLLDRT
GTATLEEAFVALMPEEKRRGHKAVAIVPRTGDASDIAIEAKGLTMRFGDFVAVDHVSFRI
PRGEIFGFLGSNGCGKTTTMKMLTGLLQPSEGEARLFGQPVDAGNIETRRRVGYMSQSFS
LYSELTIRQNLELHARLFQVPEDVLPRRVAAVAERFGLADAMEALPDRLPLGQRQRLSLA
VAMVHEPAMLILDEPTSGVDPIARDAFWEIMIGLARRDGVTIFISTHFMNEAERCDRISL
MHAGRVLVSDTPAALVAKRGTATLEEAFIGYLEEAVAARRESDAAAPDGRRQVPSVATPL
GERAESRFFNPRRMLSYSLLEALELRRDPIRATLALVGSLLLMVIMGYGINMDVEDLSFA
VLDRDQTTISRDYTLNLAGSRYFVERAPIIDYEDLDRRMRAGALSLALEIPPGFGRDVAR
GRQVQIGAWIDGSMPTRAETVNGYVQGMHSQWLASQTNTPSLATIETRFRYNPDVESLKA
IVPAVIPILLLLIPAMLAALSVVREKELGSIINLYVTPVTRLEFLLGKQLPYVGLAMLNF
LLMVAMAVTVFGVPLTGNLLALSAGAVLYTIAATAMGLLMSSFMRSQIAAVFGTTIATLI
PATQYSGMIDPVSSLGGAAALIGEVYPTTHFLTMSRGVFSKALGFGDLHAAFVALLIAVP
VLIGASALLLKKQET