Protein Info for AZOBR_RS27485 in Azospirillum brasilense Sp245

Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 PF00111: Fer2" amino acids 57 to 111 (55 residues), 37.3 bits, see alignment E=2.1e-13 PF01799: Fer2_2" amino acids 124 to 197 (74 residues), 105.5 bits, see alignment E=1.2e-34

Best Hits

KEGG orthology group: K13483, xanthine dehydrogenase YagT iron-sulfur-binding subunit (inferred from 53% identity to mes:Meso_0582)

Predicted SEED Role

"Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16)" in subsystem N-heterocyclic aromatic compound degradation (EC 1.3.99.16)

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.16

Use Curated BLAST to search for 1.3.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AXH8 at UniProt or InterPro

Protein Sequence (206 amino acids)

>AZOBR_RS27485 oxidoreductase (Azospirillum brasilense Sp245)
MPDPQDRQPFDLTRRQVLEAGTIVSLTGAMLPTAALAQHAGPQPSPENGMTVHLSFRVNG
RPTALDVDARASLLDLLRERLGLVGAKKGCDHGQCGACTVHLDGRRVASCLTMAAKADGR
DVTTIEGIAGANGLHPMQQAFIDHDALQCGYCTPGQIMAAIACVKEGHASTPEQIKEYMS
GNICRCGAYVGIVAAIEQAVPQIERS