Protein Info for AZOBR_RS26205 in Azospirillum brasilense Sp245

Annotation: conserved exported protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF16576: HlyD_D23" amino acids 220 to 331 (112 residues), 38 bits, see alignment E=1.1e-13 PF13437: HlyD_3" amino acids 262 to 341 (80 residues), 48.5 bits, see alignment E=1.3e-16

Best Hits

KEGG orthology group: None (inferred from 41% identity to atu:Atu5091)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AWM7 at UniProt or InterPro

Protein Sequence (403 amino acids)

>AZOBR_RS26205 conserved exported protein of unknown function (Azospirillum brasilense Sp245)
MHKLFKLTAGLTIAGVAGYIVLAEGVAVVSADAVVNARVAVVRAPIDGQLSLQPRAIGER
VQRGQTLGNLTDVRADDARLFDLERVAGALDTDIGRIQAQISSMATSAATLRERTEAYRD
GRIRQLKARIDEQQALLSSAKAQSTESTAALKRAEELRVNGVQSVAMLDKAQAAHEVNSL
NIRAATARLDVLRTELEAASNGTFLGDSYNDTPYSSQRSQELELRLGELSAELQERTQRL
TKIREQIALERQRVAKLRDAFLTSPVDGLVWEAPLGNDEYARKGQDLLRLLDCSTVIVTA
SVAESDYNRLKVGDPAQFRLSGTNRVFNGQVLRLAGSGAATVYNNLAIAPGADHLKRFDV
ALAIPDLLKDAEAGCAVGRTGKVVFSGTPRDLLRTVGSWLGLA