Protein Info for AZOBR_RS25815 in Azospirillum brasilense Sp245

Annotation: cyclic peptide transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 18 to 40 (23 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 136 to 166 (31 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 265 to 290 (26 residues), see Phobius details TIGR01194: cyclic peptide transporter" amino acids 21 to 535 (515 residues), 316.6 bits, see alignment E=1.5e-98 PF00005: ABC_tran" amino acids 351 to 483 (133 residues), 76.9 bits, see alignment E=1.3e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AW79 at UniProt or InterPro

Protein Sequence (550 amino acids)

>AZOBR_RS25815 cyclic peptide transporter (Azospirillum brasilense Sp245)
MRLAAIVLRELPENLRTLALMNVLSAIATAALLWLVDAAAKDAAKGIVSPRLLVMYAVTV
TLFGVTHNYALVTASQDAERLIHRIRLRLFDLVRRADLVTVDRIGRASLHGVLTQDTQTL
AQTLPLLAIGGQQAVMLVFLAVYLAWLSPLACVMAFAFAGIAVAVKVARVQRLRRSMVEA
AAAEARVFDGLTDLLRGFKEVRMNRRRGDGLIHDLADASSRARAVNVDMKEQWGRNFALV
EAMFYTLIGMMVFVVPLFTTGYHEVVVAATTAALFIVGPVSTVSFVTPLVAQTELALSNI
EAMEERLRAAAGSAPDEGAERLPGPPTSIALKDATFAYHDGEGAPVFAVGPLSAEFRAGE
ITFVTGGNGSGKSTMLRLLTGLMPLDGGQLLADGEPVPAERMQSYRDMISAIFSDYHLSR
RLYGVADPDPARVRLLLERLEMQDKVTIADGGFSTVALSTGQRKRLALVVAQMEDKPVIV
LDEWAADQDPHFRRVFYEELLPELKALGKIVICVTHDERWFGLADRVYHMNEGRIEEGHG
HHHLFALEPA