Protein Info for AZOBR_RS25135 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 25 to 42 (18 residues), see Phobius details amino acids 54 to 78 (25 residues), see Phobius details amino acids 85 to 107 (23 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 229 to 251 (23 residues), see Phobius details PF09678: Caa3_CtaG" amino acids 36 to 254 (219 residues), 119.1 bits, see alignment E=1e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AVS3 at UniProt or InterPro

Protein Sequence (262 amino acids)

>AZOBR_RS25135 membrane protein (Azospirillum brasilense Sp245)
LPSIIPYCGAPPVPDGFWSAWNGDPVLLSVFALAAVGYAALAKRHGAAMERHQPWCFAAG
WLVLFAAFVSPLCNLTSALFSARVVQHLLTIQVAAPLLVLSWPIGAVRWPNWARTLASPL
AVPEIAWGLFGLFLWVWHLPGPYMAALRFDAVLWGMHASLLVGAVAAWRTVLAPDGPAMR
GRGLLSAFGTSVHLAILAALLIFAPQPLFVYHLDTTAPWGLSALADQQLGGLIMGVVGAA
VYVAVNLYALARWLMVPERQRT