Protein Info for AZOBR_RS23755 in Azospirillum brasilense Sp245

Annotation: multidrug transporter AcrB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 352 to 371 (20 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details amino acids 404 to 424 (21 residues), see Phobius details amino acids 454 to 475 (22 residues), see Phobius details amino acids 486 to 506 (21 residues), see Phobius details amino acids 544 to 563 (20 residues), see Phobius details amino acids 908 to 927 (20 residues), see Phobius details amino acids 934 to 954 (21 residues), see Phobius details amino acids 961 to 984 (24 residues), see Phobius details amino acids 1005 to 1025 (21 residues), see Phobius details amino acids 1032 to 1058 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 11 to 847 (837 residues), 352.9 bits, see alignment E=3.5e-109 amino acids 906 to 1058 (153 residues), 111 bits, see alignment E=4.2e-36

Best Hits

KEGG orthology group: None (inferred from 69% identity to rpx:Rpdx1_1181)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AUS8 at UniProt or InterPro

Protein Sequence (1073 amino acids)

>AZOBR_RS23755 multidrug transporter AcrB (Azospirillum brasilense Sp245)
MRLGLSGVLTRTFIRSPLTPLLLLASLAVGAIALRSLPREEEPQISVPMVDILVQADGLK
AGDAVELVTRPLEEIVEGIDGVEHTYSQTMDDRVVVTARFLVGTPSDDAILRVHEKVRAS
LDRIPLGIPEPLIVGRGINDVAILTLTLSPRAEAAGRWTVNALHGVADDLLGQLTQVEDV
GRSFIVGGSPDQIRVEPDPERLALYGVTLNQLVDKVRNANRSFLAGSLRNAGGSLPVVAG
QTLQGTADIGLLLVTTRDGRPVYVKDVADVVAGARPDESSAWHLVPDGKGGLVRSPAVTL
AIAKRAGANAVTIADRVLARVQAIQAEGLPKDLTLTVTRNYGETANEKVNELLFHLALAT
VTIVGLIVLAIGWREGLVTLVVIPTTILLTLFASWLMGYTINRVSLFALIFSIGILVDDA
IVVVENIDRHWSMRDGRGKVQAAVEAVAEVGNPTIVATLTVIAALLPMMFVSGLMGPYMS
PIPANASAAMAFSFFVAMVLTPWLMLTLRPGETPVDGHGEPDGGRLGRLYRAAARPVVRS
KRRAWIFLLAVGMATLASTGLFYSKDVAVKLLPFDNKSELQVVLDLPRGAAPEDTERALF
AAARTIADLPELASVQAYAGTASPFTFNGLVRHYYLRDQPEQGDLQVNLAPKGERSRSSH
AVALDIRARLSALPLPAGTMLKVVEVPPGPPVLSTLLMEVYGPDAETRRKAALAVEDAFR
GVDFIVDVENSIRPTGDRLRFALDRESLEFHGVEEQAVYDTLRALTGGVPVGYSHRGAGR
TPIEIAVRMPRSGLFLSERLLATPVPGARGTVELGDLVTMTREPASHTLFRHNGRFAEMV
MADLAGRFEAPIYGMLAVQERLDAVDWAAAGLAAAPEIRLHGQPDDQSRPVLLWDGEWEI
TYVTFRDMGAAFGVAILGIYLLVVAQFGSFKLPLVILVPVPLTLIGIVLGHWLFGAAFTA
TSMIGFIALAGIIVRNSILLVDFIRHLRERGMPLREAVLEAGAIRFKPILLTAVAAMIGA
AFILTDPIFQGLAISLLFGLFSSTLLTVLVIPAIHIVLRGDAADRRDRSNLQG