Protein Info for AZOBR_RS22195 in Azospirillum brasilense Sp245

Annotation: organic solvent tolerance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 806 signal peptide" amino acids 1 to 52 (52 residues), see Phobius details PF03968: LptD_N" amino acids 102 to 156 (55 residues), 23.7 bits, see alignment 4.8e-09 PF04453: LptD" amino acids 354 to 724 (371 residues), 195.1 bits, see alignment E=2.5e-61

Best Hits

KEGG orthology group: K04744, LPS-assembly protein (inferred from 67% identity to azl:AZL_014420)

Predicted SEED Role

"Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AQ01 at UniProt or InterPro

Protein Sequence (806 amino acids)

>AZOBR_RS22195 organic solvent tolerance protein (Azospirillum brasilense Sp245)
MSQLPSRHARRARATSPKMHRPLDRRSLVLRSGIVALMAACGIVLADLADAQQPPAPAPQ
ANGAPPVGADQGGRLEVVVPASGPAAGPSSGQPQDPPVLLGADTVTFDETNSLVTASGNV
ELSQGPRTVHADTITYNQKTKVVIASGNVRLVEPSGDILFSNYAELTDDMRDAFVENVRV
LMTDNSRMAGNEGERRGGRLIRLNRAVYSPCELCKTDPTRAPVWQIRAARVVQDNEDHEV
RYRDAVMEMFGVPFFYTPYLSHPDPTVDRRSGFLTPSFRNNSNLGFGAIAHYYWDIAPDQ
DATFDLGGYSEQGLFLGGQYRKRFENGRLQLDASGTQGEIPNGTLKGADDRRWRGHAFAS
GLFDIDETWRWGFNLKRASDELYLRRYFNIRDEVLTSRAFVEGFNGRNYAAVNAYAFQDL
RWGNPVQEPYVLPEARYNALGEPGSLLGGRWSLDSSLLAIARPGSGGPDTQRLAMQPGWQ
RDIYSNLGFVTTIEGSVLLAGYTAQRFDPNDPAGGTGNDSVQRLRFFPQATTTVRYPFVR
YGESSFQTIEPIGQVSVSPKVDNDPAFPNEDSLDVEFDEVNLLMPNRFTGIDRLDGGLRA
TYGLRTTFQGYKTGSASLFVGQSFRADDTENFRGGSGLDKKSSDYVGRLDLRPADWLDVN
YGFRIDHDTLKPRRHSVNASAGVPLLRVAGTYTYVDQTENPYVVERNEVEQAGISVSSQF
SEHWSIGVSHSQAFRPDAGPRSSAGVLRYQDECLIFETIAQRDYTVIQNGEQEGNSIFFR
FVFKNVGEFRTPGISAGFLGPSGASN