Protein Info for AZOBR_RS21625 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1772 PF13432: TPR_16" amino acids 4 to 53 (50 residues), 17.3 bits, see alignment (E = 3.9e-06) amino acids 40 to 101 (62 residues), 30.3 bits, see alignment (E = 3.4e-10) amino acids 109 to 168 (60 residues), 18.8 bits, see alignment (E = 1.4e-06) amino acids 177 to 237 (61 residues), 22.8 bits, see alignment (E = 7.9e-08) amino acids 217 to 270 (54 residues), 23.5 bits, see alignment (E = 4.8e-08) amino acids 650 to 702 (53 residues), 16.7 bits, see alignment (E = 6.3e-06) amino acids 790 to 834 (45 residues), 19.9 bits, see alignment (E = 6.1e-07) amino acids 839 to 881 (43 residues), 21.9 bits, see alignment (E = 1.5e-07) amino acids 1382 to 1440 (59 residues), 30.5 bits, see alignment (E = 3e-10) PF13181: TPR_8" amino acids 68 to 100 (33 residues), 21.9 bits, see alignment (E = 1e-07) amino acids 238 to 270 (33 residues), 18.3 bits, see alignment (E = 1.5e-06) amino acids 1380 to 1410 (31 residues), 12.3 bits, see alignment (E = 0.00013) PF13374: TPR_10" amino acids 72 to 98 (27 residues), 14.9 bits, see alignment (E = 1.7e-05) amino acids 1413 to 1441 (29 residues), 21.9 bits, see alignment (E = 1.1e-07) PF14559: TPR_19" amino acids 218 to 270 (53 residues), 30.1 bits, see alignment (E = 3.8e-10) PF13414: TPR_11" amino acids 865 to 896 (32 residues), 31.9 bits, see alignment (E = 6.3e-11) PF13176: TPR_7" amino acids 1381 to 1414 (34 residues), 16.6 bits, see alignment (E = 5.1e-06) amino acids 1414 to 1446 (33 residues), 17.8 bits, see alignment (E = 2.1e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8APM2 at UniProt or InterPro

Protein Sequence (1772 amino acids)

>AZOBR_RS21625 hypothetical protein (Azospirillum brasilense Sp245)
VARDLGTLLNERGDFAEAVAVLAPAVDADTGRDARLLFHLGSALQGDGRLAEAVARYREA
LLQDPLLAGAWNNLGVALLDLGDHAAAVRVLRTCIALRPTDAVAFNNLGTGLDGVERPEA
AAGVFRRSLIIQPDYGKALNNLGNSRRVARRAEAAEALYRRALIVQPDYPDSYTNLGNVL
KDWDDWQGALRLHRRAVRLAPRSAIARTTLGLALNVLGRNEEAEAAHRRALSIDPGHAEA
YANLGMLQWQSTRVAEAERTLRRALRIDPTLAAARLNFALVSLASGNLSEGWEAYQDRFR
AKGHPERTIGAPLWRDDAATVRRLLVWREQGVGDEMMFASCYPALADRVAAGRIGQVVLE
CDPRLVSLFSRSFPWATVRGEAAAPHGTETLVSPDGDAHIAAGALPRLLRPDLASFPPRP
WLVPDPERLAVWRERLAILGPGLKIGFAWRSQLMTTERKAAYITLEAFEPLFAVPGVVLV
NLQYGDCEAEIAAAEARFGVTIHRWSDLNLKDDFEGAAALTASLDLVIAPAVSTGELAGA
LGVPAWRIGARDWTQLGTGVRPWYPTMRLFQPRPGETLDAVMARIAQTLRGLARPVEGVT
SRPPAAPVDVAPLVAEAVAGYRAGALKDAEDQCRAALDSVPDHPVALHLLGILRLRQGDA
GEAAVVLALAVKADPDNAAAHAALADACKAAGRHDSALAAQRNAVLLRPDAAEHWLNRTA
LLRERGAGDEAEACARRALRIRPSLGVAHTHLGHLLAEREDRAGAERSHRRALALTPSEV
DALVNLGALRLRADQPAEAERLLRRATVTAPHAAIAWSHRGSALDRLGRVEKAFACHSRA
VGRAPEMAEAQANLAMHWARRQRPAEAIAAYREAIRINPALPTAHYNLSLLLLEQGELRS
GWAEHDWRFDTPQFRDQKRRFAVRPWRGENIASARLLVWREQGVGDEILFASCYPDLLRR
AGHLVVECDRRLVSLFARSLPGATVRPPTVEPRDVDVQVAAASLPRLLRSDWKRFPAQPW
LVPEPGRLDRWRNRLAALGPGLKVGIAWRSQIMDGERRAAYVTLDALAPLFAVPGVVFVN
LQYGDCAAEIAAAEARFGVTIHRWDDLNLKDDFEGAAALTANLDLVLTPAVSSGELAGAL
GVPVWRFGHRDWTQLGTGVRPWFPSMRLFQPRPGEGLDAVTGRMAITLRRLMPVDDEPPT
GGDAAIDPDLLLEAAAAHHRDGRLAEAAPLYERVLTARADHPVALHLSGLLAHQSGDSAA
GAGRIARALDALPAYGAAQSSLGTVLMALGRAPEAVRRFRLALALQPGAAAALTNLGNAL
EAVHDLRAAAQAHRRATLADPTLAEAHDNWGAVLTRLGALEAAEERHRHALRLAPEREDG
WLNLGVALRRAGRLDEARRTLVRALALAPAQGDALANLGRLLRDRGETAAAERWCRRALR
VEPGHPAAAFNLGLLDLARGRLEAGWAGYDARFRARELSGAARAVAVPAWEGEDPAGLRL
LVWAEQGIGDEILFAGCLDDLIARAAAVVVECDRRLVPLFARSFPRAEWRPAPADPEAPC
AGIDRHVAMGSLPRWLRPRFDRFPSRPSFLTADPERAAQWRERVDALGSGLKVGIAWRSG
LMTAERRGAYAPLDAWGPVFAVPGAIFVTLQYGDCAAEIAEAERRFGVTIHRWGDLDLKD
DLDGVAALMTALDLVITPASSVGELAGGLGVPVWRFGLQGDWTALGTGARPWFPTMALIT
APPGQPASGALPTIARRLAEFRAAAWRGNADT