Protein Info for AZOBR_RS20180 in Azospirillum brasilense Sp245

Annotation: flagellar assembly protein FliH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF02108: FliH" amino acids 107 to 248 (142 residues), 67.9 bits, see alignment E=4.6e-23

Best Hits

KEGG orthology group: K02411, flagellar assembly protein FliH (inferred from 62% identity to azl:AZL_a02930)

Predicted SEED Role

"flagellar export protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ANP8 at UniProt or InterPro

Protein Sequence (256 amino acids)

>AZOBR_RS20180 flagellar assembly protein FliH (Azospirillum brasilense Sp245)
MSSVRKFLFDESFDVDAPPRRQLQADDDYFDNIPLPEPEPEPEPELPPEPPPPVFGEADL
AAARAAGFTEGETAGKSTGYGKGFVDGNNAGRKDGYEQARVEIEATVQARIANALETVGN
GVQHLLNEHYATSAQRADQPVHIALAIVRKLMPELARRGGLMEVEGLVRACLTDLIDEPR
LVVRVADDMVDAVREHLDQVIAARGFGAKLMVVGDSGLAPGSCRIEWAEGGVERDTAGLL
AQIERRMAGLLEAPPG