Protein Info for AZOBR_RS18220 in Azospirillum brasilense Sp245

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1028 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details transmembrane" amino acids 688 to 706 (19 residues), see Phobius details amino acids 720 to 739 (20 residues), see Phobius details amino acids 750 to 770 (21 residues), see Phobius details amino acids 794 to 815 (22 residues), see Phobius details amino acids 821 to 848 (28 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 54 to 412 (359 residues), 124.2 bits, see alignment E=1e-39 PF00924: MS_channel_2nd" amino acids 841 to 906 (66 residues), 57.1 bits, see alignment 1.6e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ASM0 at UniProt or InterPro

Protein Sequence (1028 amino acids)

>AZOBR_RS18220 conserved membrane protein of unknown function (Azospirillum brasilense Sp245)
MLSSLQPRSRPPLRWSHLTKKARFALILAAAMLVTVLVSLVVRAGFLGDTAREPLTVAVV
GPLSGPDAALGLALRKGAALRADTINAAGGIAGRPVVVKPFDDEGDKGKSLEIARRVSND
PSILAVIGHTPDATDSATAIYAQRQIPLIAPRPLVRPADAAPSPWLFSITLDRTHETRFL
ANYVRNVVGEPTVAIVREDSEQAASQAGQFDAILQRFGTKLVGQWTFAPGRGGAGALPAL
AQAVKEKMPTGAVVVIGSAVDSARVVVALRDAGVRNLIAGSSEMASSAFRTEIVAQTQAN
PKALTPEAYGHGLLVSSPVLFDTANERAQRFYGQYVKRFNAVPDWAAALGADGVDLIAGA
IAKTNTATGKPDGEALRRAIADHDRAETAFQGTVGTWTFDNRGQATLPVMMASYNGLNPV
AALTQLQPIREAGVSNFLEEVTKGRALYVNDRFMYKTDVIYTGVQLHEIRDLNPDTNEAT
LNLTIWFRYRGAFNPADVVFTNAVKPVELGKPYREERGEVTTYVAYRIEGRFALNVFDQR
PPYGSQTVGVSFRHRTQNRNTVMFVTDVLGMSLVDTNDFVEKLKAMAAAETASAVDPGLA
DRFRRALEGESESSTLLDQLRAKRVLAPSPGWRLSRAWISQDVASVGSEGDPNYVGFGRP
QPDFSRVDFGVVATPDSPAARDFIHRDFFVYIAIFSAVLAVFAAVMDRRDRGQFWKIQTL
FMRILSWPLLLMSAGNIALDQAVATLPASGIAMVVNGVDVLWWIVPAILVDRTLERFVWT
PLEIRTQRKIPGIVRRFSTLIVFGFAGCGIIAFVLKQPITSLLAASGLVGMVIGLAIQAN
IANVFSGIVLNIERPFQIGDSIQITDLVRGVVVDMTWRTVRIRNVAGFIVAMPNAKVSEA
TVINFSAVDRVSMKLEYYADARHDPGQMGGLLTTALQNADKVMPSATGGPPFVRYDGIRG
VNGQWLCKYNLFFWVEDYDASFVVPELVWRSVYRTLAEAGIEPTPPDLMEAAGPAAVATN
AQRRAIPA