Protein Info for AZOBR_RS17715 in Azospirillum brasilense Sp245

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 PF13439: Glyco_transf_4" amino acids 18 to 121 (104 residues), 48.6 bits, see alignment E=2e-16 PF13579: Glyco_trans_4_4" amino acids 19 to 121 (103 residues), 33 bits, see alignment E=1.5e-11 PF00534: Glycos_transf_1" amino acids 173 to 304 (132 residues), 70.3 bits, see alignment E=3e-23 PF13692: Glyco_trans_1_4" amino acids 174 to 306 (133 residues), 52.4 bits, see alignment E=1.4e-17

Best Hits

KEGG orthology group: None (inferred from 63% identity to sme:SM_b20117)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AS94 at UniProt or InterPro

Protein Sequence (351 amino acids)

>AZOBR_RS17715 glycosyl transferase (Azospirillum brasilense Sp245)
LRIAQVAPLYEAVPPRLYGGTERVVSYLTEELVRQGHDVTLFASADSRTTARLSPCCRQA
TRLDSAVRDPIIHHLLMLEHVRQQRDAFDLIHFHTDYLHMPMFRDRAGRTVTTLHGRLDL
PDLQPFYREFDGMPLVSISDHQRAPMPPVRWLRTVHHGIPADLLHPRFAPGGYLAFLGRI
AAEKQPDHAIEIAKRAGLPLKIAAKVDKADSQYFRDTVEPLLDHPLVDFIGEIGEDRKSA
FLGNAAALLFPINWPEPFGLVMIEAIATGTPVIAYPCGSVPEVIEDGVTGFIADGIDAAV
GAVRRLGEIDRRGVRRRFETRFTAARMAADYITLYRRLLDGHEPLVEVDAA