Protein Info for AZOBR_RS17705 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 PF20703: nSTAND1" amino acids 129 to 280 (152 residues), 99.7 bits, see alignment E=1.5e-32

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AS90 at UniProt or InterPro

Protein Sequence (353 amino acids)

>AZOBR_RS17705 hypothetical protein (Azospirillum brasilense Sp245)
VADIAVFLLRPPFTPPFRPALRIEPPRRVVAPGQRVAFHSFGFMGAQDGVPVHGVLTAVD
ASGWFVADGDGQFERFIEEGLSGAPIFANGRVLGMVVQRLEKDAKQGAKQGLVIPAFSLA
RAWPPLASPYPGLPAFDVDTAHLFFGRGRPVDPDAEPTGTLKALLDRLHTQRLVALLGAS
GSGKSSLAKAGVAEVYRRRGWAVVTVRPGLTPLRNLAEAIAAEVEGLGPGPERLVAMDRW
ERSLEAGRLAEVVTAARGQGALGLLVVVDQFEEFFTSAAGEGAAHAGGPPADAGAAEIDR
PGVGHLGKHSGFNRAGGALQRCAGGDFQLRGAPHRHSVERQHSPPVGRFPGPR