Protein Info for AZOBR_RS17475 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 PF13432: TPR_16" amino acids 14 to 54 (41 residues), 19.7 bits, see alignment 4.6e-07 amino acids 38 to 101 (64 residues), 33.5 bits, see alignment E=2.2e-11 amino acids 73 to 127 (55 residues), 26.5 bits, see alignment 3.6e-09 PF13424: TPR_12" amino acids 34 to 96 (63 residues), 31.4 bits, see alignment E=9.1e-11 PF13428: TPR_14" amino acids 34 to 75 (42 residues), 23.7 bits, see alignment 2.6e-08 PF13176: TPR_7" amino acids 35 to 66 (32 residues), 15 bits, see alignment (E = 1.1e-05) amino acids 70 to 99 (30 residues), 14.7 bits, see alignment (E = 1.4e-05) PF13181: TPR_8" amino acids 35 to 66 (32 residues), 13.1 bits, see alignment (E = 4.8e-05) amino acids 67 to 99 (33 residues), 12.6 bits, see alignment (E = 6.8e-05) PF13414: TPR_11" amino acids 40 to 81 (42 residues), 31 bits, see alignment 8.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AS28 at UniProt or InterPro

Protein Sequence (449 amino acids)

>AZOBR_RS17475 hypothetical protein (Azospirillum brasilense Sp245)
LAVRPRPAGGTRMDHAQATTSLEALLAASPRDGAAWSMLGHLLRRAGKLDGAIACHRRGL
EVAPENASIWSNLGNALVEAGRSDEALAAHAEALRLEPQAPAFLFNSAVALRKAGRFKDT
LAMIERAAADGTATPELRWERALARLQIGDYVHGFTDYEARRGLAAYHGRPPSERAWNGG
SLDGRTLYLFTEQGFGDAILAARYVPLVRERGGRVLYDCHPELRRVLSGLGVDAVLQPGD
PPPAFDVEASQMSLPGLFGTTLASVPPPVSLTVPDSSRAKAAHRLGAREPGTLRVGIVWS
GRVTFADNGRRATSLARFLRFAEVPGVRLYSLQKGPPEAELADSGVAGHLVTPLGPDLED
FADTAAMLEQLDLVIMTDSSVAHLAGSLGKPVWNLVQHVPYWIYGFSGDRTPWYPTMRLF
RQGPDQDWEPVFARAVDALREEVRRTTGR