Protein Info for AZOBR_RS16975 in Azospirillum brasilense Sp245

Annotation: exopolysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 194 to 218 (25 residues), see Phobius details PF06055: ExoD" amino acids 36 to 211 (176 residues), 187.4 bits, see alignment E=7.8e-60

Best Hits

KEGG orthology group: None (inferred from 43% identity to avi:Avi_3870)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ARR7 at UniProt or InterPro

Protein Sequence (230 amino acids)

>AZOBR_RS16975 exopolysaccharide biosynthesis protein (Azospirillum brasilense Sp245)
VSDGRPPDTPPDPQAPEGVDRGDAATTGFPPVNPASAVLDDFLNHDHGARIALGDLVGIL
GDRAFGALLLILSIPNILPVPGLSTATGLPMLLIGAQIAAGRDRPWLPRRLAALTLDRDA
FLRVIAKAKPHVDRLERHLRPRLPAMTAPTAERLLGVAVMILAGILALPIVFGNQPPAFA
IALIALGLIEKDGAFVIAGLVAGLIAIVIVAAVLFGFGQAGMLIFDKLFS