Protein Info for AZOBR_RS16850 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 601 PF13432: TPR_16" amino acids 10 to 72 (63 residues), 38.7 bits, see alignment E=4.6e-13 PF14559: TPR_19" amino acids 16 to 60 (45 residues), 29.9 bits, see alignment 2.3e-10 PF00534: Glycos_transf_1" amino acids 430 to 575 (146 residues), 34.7 bits, see alignment E=5.3e-12 PF13692: Glyco_trans_1_4" amino acids 433 to 563 (131 residues), 40.4 bits, see alignment E=1.4e-13

Best Hits

KEGG orthology group: None (inferred from 70% identity to azl:AZL_a05290)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ARN9 at UniProt or InterPro

Protein Sequence (601 amino acids)

>AZOBR_RS16850 hypothetical protein (Azospirillum brasilense Sp245)
MDTIEQTLAVATEHHRAGRTTEAERLYREVLAASPGHPDALHLLGVVALQGGRPAEAVDL
IGQAVAGDPTSPLLHANLGHALHATGQTRDAALSFARALTLLTNEGEGWGNVSALAGLIR
RYDDETRRAAAAEVDAAYAMGDVMRRHSLLFLLDGDVAHYEALTDAVLEDPMRFTVPSIH
YAFWGMAMQLFQGAARSGDAGAFHTGNLTDYYRLMVDETALRFHLRRRMKRATPRGEVRR
IALITNQMLGAGHQPTADAFDFARRLQDEFGREVVIINPNAMAITGENGFVPEYSYNITE
EYEGEQVIAAFGARVRMMSFPQKRFDEEKVNAIVDYVDGFDPDVIVAFGGSNVVADLFSG
ARPVICLPTSSGLPLSMARLVLGYGEADTTQGWPADMAERFRPFSFGWTLPPTGPERSRA
DFGLPEAGPDGGPLFLVVGNRLDQEAGPEFLALADSLLDRLPDARIAIAGGVESLPQRIA
ALRNADRVHTLGDVEDVRALHRLATAYLNPRRQGGGGSAAFALADGVPVVTVAAGDVAAV
AGPAFTVADDAAFLERAAALANDVAFRDRQSAEARARFAAAGDRRASVERLLAYGLEAQT
A