Protein Info for AZOBR_RS16505 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR02122: TRAP transporter solute receptor, TAXI family" amino acids 8 to 325 (318 residues), 363.2 bits, see alignment E=4.7e-113 PF16868: NMT1_3" amino acids 36 to 325 (290 residues), 306.4 bits, see alignment E=2.4e-95 PF09084: NMT1" amino acids 109 to 178 (70 residues), 27.6 bits, see alignment E=2.6e-10

Best Hits

Swiss-Prot: 79% identical to BCSP_BRUME: 31 kDa immunogenic protein (bcsP31) from Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)

KEGG orthology group: K07080, (no description) (inferred from 79% identity to bmf:BAB1_1216)

Predicted SEED Role

"TRAP transporter solute receptor, TAXI family precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ARG2 at UniProt or InterPro

Protein Sequence (328 amino acids)

>AZOBR_RS16505 hypothetical protein (Azospirillum brasilense Sp245)
VKFMSKTRRLAFAAVAGAVAIGATVAVAQTPAFFRIGTGGTAGTYYPVGGLIANVISGAN
GGVPALVATAVASNGSVANINAIKGGSSESGFSQSDVAYWAHTGTGLFEGKGKVEDLRVI
ATLYPETIHLVARKDANIKSVADLKGKRVSLDEPGSGTLVDSRIVLGAFGLTEKDVKAEY
LKPGPAGDRLRDGALDAYFFVGGYPTGAISELATSSGISLVPITGPEIDKMLAQYQFFAK
DTVPANTYKDVPETPTISVNAQWLTSAKQPDDLVYNIVKTLYNEKSRAALEAGHAKGKLV
TLQTATNGLGIPLHPGAEKFYKEQGVLK