Protein Info for AZOBR_RS13080 in Azospirillum brasilense Sp245

Annotation: putative MFS superfamily multidrug transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 16 to 40 (25 residues), see Phobius details amino acids 47 to 69 (23 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 106 to 129 (24 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 221 to 238 (18 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 287 to 305 (19 residues), see Phobius details amino acids 311 to 336 (26 residues), see Phobius details amino acids 349 to 371 (23 residues), see Phobius details amino acids 382 to 401 (20 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 232 (213 residues), 132.4 bits, see alignment E=3e-42 amino acids 225 to 400 (176 residues), 59.8 bits, see alignment E=3.4e-20 PF00083: Sugar_tr" amino acids 50 to 194 (145 residues), 27.7 bits, see alignment E=2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AGN2 at UniProt or InterPro

Protein Sequence (414 amino acids)

>AZOBR_RS13080 putative MFS superfamily  multidrug transport protein (Azospirillum brasilense Sp245)
MDTVPNAARTAEWRVIAPMLVIVLFVMCGMGMVIPVLSLYAQSFGVGPALIGLIITVFGV
ARLFVNLPAGILADRYGRRALLWGGPLVLGGASIAAALAEDFAVLLVWRFVQGVGSGLYM
TGAMVAIADLGDSRSRGRRMGAYQTALLTGASIGPLMGGLLAERWGYTAPFWGFAAVSGL
AALFAFLALPETRRPANANAGADTRPPERGGVRDLLRQRGYAPVLLVTFGVFFTRTAAQW
QLIPLVAAHRFGMAPDAIGLALTLSAGVTLVTTPLAGWLADRVPRRGLIVASAASVAVAL
GLIAACPTVPLFWGALALLGLALGLGGPASSAFAAGCAPDGRLGPTLGLLRTAGDVGFVA
GPLVAGFAVAVSDTAFGGGEAAGLFVNAALMAIAAAAFAAGTHRLSPLPKETTA