Protein Info for AZOBR_RS12700 in Azospirillum brasilense Sp245

Annotation: cupin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 PF07883: Cupin_2" amino acids 42 to 97 (56 residues), 43.6 bits, see alignment E=2e-15 PF02311: AraC_binding" amino acids 46 to 120 (75 residues), 30.7 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 79% identity to rlt:Rleg2_2046)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFX7 at UniProt or InterPro

Protein Sequence (131 amino acids)

>AZOBR_RS12700 cupin (Azospirillum brasilense Sp245)
MEIIRVGAQPSVTGPADWFTGTVRIDAIVQTEAPARTAAASVTFEPGARTAWHTHPLGQT
LIVTAGFGRVQREGGPIEEIRPGDVVWFPPGEKHWHGASPTMFMTHIAIQEQLDGKAVDW
MEKVTDEQYGA