Protein Info for AZOBR_RS12470 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 transmembrane" amino acids 7 to 51 (45 residues), see Phobius details amino acids 71 to 92 (22 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details PF03733: YccF" amino acids 7 to 57 (51 residues), 65.8 bits, see alignment E=2.2e-22 amino acids 79 to 128 (50 residues), 66.1 bits, see alignment E=1.8e-22

Best Hits

KEGG orthology group: None (inferred from 81% identity to azl:AZL_019720)

Predicted SEED Role

"Inner membrane protein YccF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFQ8 at UniProt or InterPro

Protein Sequence (149 amino acids)

>AZOBR_RS12470 membrane protein (Azospirillum brasilense Sp245)
MPFLSLLLNILWVVTGGIWMAAGWLLAAVLMVITIVGIPWARSAFTIAWYTLLPFGQTAV
RRDEFRGREDIGTGLLGTLGNILWFVLAGWWLALGHLVAAVGLAITIIGLPFAWAHLKLA
LLALWPVGTEIVTVDEAESRRRLLGRGAY