Protein Info for AZOBR_RS11850 in Azospirillum brasilense Sp245

Annotation: ribonuclease E

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1057 TIGR00757: ribonuclease, Rne/Rng family" amino acids 14 to 537 (524 residues), 536.1 bits, see alignment E=2.9e-165 PF10150: RNase_E_G" amino acids 232 to 503 (272 residues), 341 bits, see alignment E=5.2e-106 PF20833: RNase_E_G_Thio" amino acids 516 to 599 (84 residues), 109.4 bits, see alignment E=7.7e-36

Best Hits

Predicted SEED Role

"Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-)" in subsystem Bacterial Cell Division or RNA processing and degradation, bacterial (EC 3.1.4.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.4.-

Use Curated BLAST to search for 3.1.4.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AEV2 at UniProt or InterPro

Protein Sequence (1057 amino acids)

>AZOBR_RS11850 ribonuclease E (Azospirillum brasilense Sp245)
MAKRMLVDATHPEETRVAVVNGNRLEDLDFEIATRKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYRIPIADREALLAEERRLEEQAEARAEAAADGAVMAEPIRPD
VVVEENSPMPGSYAEAEGDGFEGDIPAFATDAGSDGGSDEAADSDEAPEGAAPAESPDVI
GGDEVEEAHRRRARPLRSYKIQEVIKRRQVMLVQVTKEERGNKGAALTTYLSLPGRYCVL
MPNTGRGGGISRKITNPADRKRLKEILSDLDIPEGMAVILRTAGLERSKQEIKRDLEYLL
RLWDDIRVQTLKSSAPCLIYEEANLIKRSIRDLYTDDIDEIWVEGSAGFNTARDFMRMMM
PSHSKRVMQYQDDTIPLFHRYQVETQIDAIHSPVVQLRSGGYIVINPTEALVSIDVNSGK
STRERNIEETAYKTNLEAADEVARQLRLRDLAGLIVIDFIDMEEPRNNAAVERRLKEAMK
NDRARIQLGRISAFGLLELSRQRLRPSLLETNFERCPHCSGTGVIRSVESASLHVLRAIE
EEGIRKRSSEITVFVPTRIALYILNQKRGELTKIEDRYRFRVMVQADDTLIAPDLRLERV
KARTPEDDVPLVSAERVLAETDRILAAEAEEAEEEAPVVEAAEVAGAEVTERADAAGESE
GDRRRRRRRRRGRGRDREDGRAPFGESAEASDEATEGDEIEAEAADADTDADETAVDEEA
IERAQIDAPEFVINDVDVGPAHIEDDEDEDADLAASEADDGTDAFETNGDANGERKKRRR
GKRGGRRRSRQREGLEAGEGLPAAESEDGVEGEAEAESFPTAVEAGRAVNPPELPADMEP
VEFDWVLTSAVAEDNAADAAPDTAAEGPTAEEAAPVAEEAPARKPRRGRAKATAAEAAES
VTAEPEAAPAKPKRAAKGAAKGGKATAKAAAAPEETAPPPAKPSRSRKAKTAAVEAAPAP
APVAAPVAEEPKKRPARKRKTAADAPAEAAPAPAPVAAPVAEEAKKRPARKRKTAADAPA
EAAPAPAVSEAPVAPANEPASANAAPEAKPRRGWWSR