Protein Info for AZOBR_RS08380 in Azospirillum brasilense Sp245

Annotation: 30S ribosomal protein S6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 TIGR00166: ribosomal protein bS6" amino acids 1 to 94 (94 residues), 82.5 bits, see alignment E=1e-27 PF01250: Ribosomal_S6" amino acids 4 to 92 (89 residues), 107 bits, see alignment E=2.4e-35

Best Hits

Swiss-Prot: 61% identical to RS6_PARL1: 30S ribosomal protein S6 (rpsF) from Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)

KEGG orthology group: K02990, small subunit ribosomal protein S6 (inferred from 87% identity to azl:AZL_016770)

Predicted SEED Role

"SSU ribosomal protein S6p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ALL9 at UniProt or InterPro

Protein Sequence (145 amino acids)

>AZOBR_RS08380 30S ribosomal protein S6 (Azospirillum brasilense Sp245)
MALYECVLIARQDISAAQAEQLGEQFAQIIRDNGGQVAKTEYWGLKTLTYKIKKNRKGHY
TLFNLDAPAAAVLEMERNMGINEDVLRFMTVRVDALDANPSVMMQSRGERGDRGDRGDRG
PRRFEDRGPRPPRRQEPTVAEGENA