Protein Info for AZOBR_RS08040 in Azospirillum brasilense Sp245

Annotation: regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 PF00072: Response_reg" amino acids 22 to 133 (112 residues), 50.9 bits, see alignment E=3.4e-17 PF08281: Sigma70_r4_2" amino acids 164 to 211 (48 residues), 39.3 bits, see alignment 8.4e-14 PF04545: Sigma70_r4" amino acids 166 to 211 (46 residues), 27.3 bits, see alignment 4.3e-10 PF00196: GerE" amino acids 168 to 223 (56 residues), 72.2 bits, see alignment E=4.2e-24

Best Hits

KEGG orthology group: None (inferred from 40% identity to rru:Rru_A3229)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ALE1 at UniProt or InterPro

Protein Sequence (233 amino acids)

>AZOBR_RS08040 regulator (Azospirillum brasilense Sp245)
MEVQLQTRGKERSVAGRAQKFLVVDDHPLVRHGFALSVGEIHPDAQVLEAGSLDEAMAIA
DRTPDLTLVLFDLNLGDRSGRDGVRRMVEVLGNRPLLVISGSDEVADIVDSVRLGARGYI
LKTSSTAVLEHAISLALTGETFLPLPRAVLSGNVAAEAARPSGQILDRLTDRQRDVFQLL
LAGHSNKEIARELGVLEGTVKVHVRAIMQKLGVRNRTQVAVVAARSGCFPEDA