Protein Info for AZOBR_RS07485 in Azospirillum brasilense Sp245

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 34 to 55 (22 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AL12 at UniProt or InterPro

Protein Sequence (267 amino acids)

>AZOBR_RS07485 conserved membrane protein of unknown function (Azospirillum brasilense Sp245)
MPLDALLLPLIVKIVAAALVVVAASLAAEKAGPFYGGMITALPVSTGPAFVMLAMEHDDG
FVADAALSGMVGNATIVLYLALLVRIAPLWSMPATVIASSVFWIATAATLRSAVEWTLPL
ALLLTLGCYGIAAWAVSAPIPADKVVRTARSRWYDIPARAGLVGLLVATVTTLSHSIGPA
ATGIAAVFPIALTSLTVILHGRMGGGVVAAAMRSALLTNPGLALALTTAHLLAEPAGRTV
ALSVALAVSLSWAGILLLWRLRRPQAA