Protein Info for AZOBR_RS04955 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 PF09370: PEP_hydrolase" amino acids 8 to 274 (267 residues), 430.5 bits, see alignment E=1.1e-133

Best Hits

Swiss-Prot: 71% identical to Y4OV_SINFN: Uncharacterized protein y4oV (NGR_a02140) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 78% identity to bte:BTH_II0883)

Predicted SEED Role

"TIM-barrel signal transduction protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AJD6 at UniProt or InterPro

Protein Sequence (278 amino acids)

>AZOBR_RS04955 hypothetical protein (Azospirillum brasilense Sp245)
MPRIPRQQILDRFRGMMARGEPIVGGGAGTGLSAKCEEAGGIDLIVIYNSGRYRMAGRGS
LAGLLAYGNANEIVVDMAREVLPVVRHTPVLAGVNGTDPFMIQDQFLRRLADLGFSGVQN
FPTVGLIDGVFRANLEETGMGYGLEVDMIRAAHGLDLLTTPYVFSEGEAVAMAEAGADVI
VCHLGLTTGGSIGAETALSLKDCVPKIDAWAEAALRVRKDVIVLCHGGPIATPEDASFVL
GACTVCHGFYGASSMERLPTETALTEQTRRFKAITKQR