Protein Info for AZOBR_RS04250 in Azospirillum brasilense Sp245

Annotation: preQ0 transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 154 transmembrane" amino acids 12 to 38 (27 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 84% identity to azl:AZL_024220)

Predicted SEED Role

"Putative preQ0 transporter" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AIX8 at UniProt or InterPro

Protein Sequence (154 amino acids)

>AZOBR_RS04250 preQ0 transporter (Azospirillum brasilense Sp245)
MLWLAAYIGSVLAINYAFSLAPHLDLVWSCWAGLIFILRDMVQVRYGHWSLAAMLAATLL
SFLLADPFVATASVTAFAVSELIDWGVFTVTRRPLRDRLWISAALSVPVDTALFFGMLGI
WDPAVWAASLASKLAGVSAVWMLMRARSARSATA