Protein Info for AZOBR_RS03255 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 47 (17 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 146 to 166 (21 residues), see Phobius details amino acids 178 to 201 (24 residues), see Phobius details amino acids 209 to 230 (22 residues), see Phobius details amino acids 240 to 261 (22 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details PF00892: EamA" amino acids 2 to 135 (134 residues), 45.3 bits, see alignment E=5.2e-16

Best Hits

KEGG orthology group: None (inferred from 43% identity to mci:Mesci_1607)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AI57 at UniProt or InterPro

Protein Sequence (290 amino acids)

>AZOBR_RS03255 hypothetical protein (Azospirillum brasilense Sp245)
LLLLVGGLIGVIFPVTKIAQAAGVPPLPWAFSMMLGAGVILAGLARVKGQAMLPAGPLTG
RYLRYFAVSGLLSMALPNVVLFFVMPWLGAGLSAVVYTLPPILTLLMAVAVRIEKPDRGR
VLGILLGFVGALMIVGPRGSLPTPDLAGWMALAFVMPLSVAAGNVYRTMAWPPGGQPVAL
AAGTMLGGAAWVALALLATGAVADLPALGLAPGLALLQIAVTALTYVLYFRLQVVAGPVY
LSQIGYVATSVGLGTGTLLFGERYSPWVWGGAAVIVLGVLLVSFGRRFAR