Protein Info for AZOBR_RS01420 in Azospirillum brasilense Sp245

Annotation: ribosome maturation factor RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 PF02576: RimP_N" amino acids 10 to 83 (74 residues), 92.4 bits, see alignment E=1.9e-30 PF17384: DUF150_C" amino acids 86 to 150 (65 residues), 51.1 bits, see alignment E=1.3e-17

Best Hits

Swiss-Prot: 59% identical to RIMP_MAGSA: Ribosome maturation factor RimP (rimP) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 88% identity to azl:AZL_028560)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFH8 at UniProt or InterPro

Protein Sequence (161 amino acids)

>AZOBR_RS01420 ribosome maturation factor RimP (Azospirillum brasilense Sp245)
MEATGRIEQIITPSVEAMGYELVRVQLTGGQRMVLQVMAERADGAPMTVEDCADISRAIS
AVLDVEDPIKSAYTLEVSSPGIDRPLTRLKDFERFAGFEAKLETRLAVDGRKRFKGMLKG
VDDGLVCIESEQGAARLEFDNILRAKLVLTDELIRASQGQG