Protein Info for AZOBR_RS01400 in Azospirillum brasilense Sp245

Annotation: ribosome-binding factor A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 TIGR00082: ribosome-binding factor A" amino acids 14 to 122 (109 residues), 66.7 bits, see alignment E=1.3e-22 PF02033: RBFA" amino acids 15 to 120 (106 residues), 97 bits, see alignment E=3.8e-32

Best Hits

Swiss-Prot: 40% identical to RBFA_BRUSU: Ribosome-binding factor A (rbfA) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: None (inferred from 69% identity to azl:AZL_028600)

Predicted SEED Role

"Ribosome-binding factor A" in subsystem NusA-TFII Cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFH4 at UniProt or InterPro

Protein Sequence (194 amino acids)

>AZOBR_RS01400 ribosome-binding factor A (Azospirillum brasilense Sp245)
MRKKHDLAGKPPSQRQLRIGEEIRHALADLFRRGDFHDPELAELNVTVTEVRISPDLRNA
TAFVTPLGGGPMDETLSALRRAAPFLRGQVARAINLRHAPTLSFEADTSFDYAGRIDDIL
HSPAVARDVGYRTLADRVNGDDDHDDEDDGWDEEDETETDDLDGDDDLDDEDDDEDEDDG
DEGNGGEGEGRRGS