Protein Info for AZOBR_RS01365 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details PF03073: TspO_MBR" amino acids 47 to 164 (118 residues), 36.5 bits, see alignment E=2.1e-13

Best Hits

KEGG orthology group: K07185, tryptophan-rich sensory protein (inferred from 58% identity to azl:AZL_026210)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFG6 at UniProt or InterPro

Protein Sequence (184 amino acids)

>AZOBR_RS01365 membrane protein (Azospirillum brasilense Sp245)
MNHRSFVPTEPATDTGPLPFRVYWWQALVFWLLTNTYGVFERGGEPFPGYQPSPLQPPGW
AFPVVWFSISLIQLWGCVRLLNAPWPIRWRPALIGMQGALWLLYASFGFAYFTMGSPILA
AAWTIAYFIIASTCVLLVWPDDRAIAASWLPLVLWTGFASIVAVHGVVLNPDPLFGLGPG
LGTR