Protein Info for AZOBR_RS01280 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 634 PF07721: TPR_4" amino acids 39 to 63 (25 residues), 12.2 bits, see alignment (E = 0.00013) amino acids 146 to 166 (21 residues), 14.8 bits, see alignment (E = 1.8e-05) amino acids 276 to 298 (23 residues), 13.7 bits, see alignment (E = 4.2e-05) PF13181: TPR_8" amino acids 78 to 108 (31 residues), 12 bits, see alignment (E = 0.0001) PF13432: TPR_16" amino acids 82 to 142 (61 residues), 17.9 bits, see alignment 1.7e-06 amino acids 246 to 305 (60 residues), 26.3 bits, see alignment 4.2e-09 amino acids 288 to 336 (49 residues), 16.2 bits, see alignment 6.1e-06

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AFE8 at UniProt or InterPro

Protein Sequence (634 amino acids)

>AZOBR_RS01280 hypothetical protein (Azospirillum brasilense Sp245)
MATLQEALLIAFDLQREGCFAEADSVYGQILDAVPGHPPALHLRGLLLAQCGRLEEGCAL
VEQAVAAVDGQAEGQPDLHANHANLLEALGRFGAAAEALARAAALDPERVALLNNFALRR
LAAGDPAAAEQALRAAVDLQPGLADPRINRAQALDALGRTDEALTQRRIAALLTPDDAGL
LGALALRPDVGEGELCRALRLDPERAALWNRLGAWRKDRGALSSARNAYERGLALAPADA
ALWNNRANVRKGQGDPGGARDALRRAAALQPESAAIRNNLADAHALCGDPEAALAEAEAA
LARDPALADARLARASALLALGRFAEGWDAWEDRWTAEPWCRTAGRFPQPLWSGQPLGGG
RLLVWGEQGVGDELMFATLLPLLTQSSTEEAQSSTTTLAGCLLECDARLAPLFARALPGV
EVVPRGPRPDPRLSAPDIAAQIPSGSLPRLLLRSEEDFRRLRPILSADPARTPAVRRRCG
RPLVGIAWHTTNPKWGRLRNVPPADLARALHAAGADMVVLQYGDCAGEVAALAAEGIAIA
LPPGLDRKDDLDGLAAQIAATDLVVTIDNATAHLAGALGHPVWLLLSHAPDWRWLVGRDD
SPWYPSARLFRQPAAGDWRTPLDAVTDRLRALFP