Protein Info for AZOBR_RS00670 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 129 to 148 (20 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 245 to 263 (19 residues), see Phobius details amino acids 269 to 286 (18 residues), see Phobius details PF00892: EamA" amino acids 4 to 144 (141 residues), 69.3 bits, see alignment E=1.9e-23 amino acids 155 to 285 (131 residues), 41.8 bits, see alignment E=6.1e-15

Best Hits

KEGG orthology group: None (inferred from 85% identity to azl:AZL_027040)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AEJ2 at UniProt or InterPro

Protein Sequence (348 amino acids)

>AZOBR_RS00670 membrane protein (Azospirillum brasilense Sp245)
MPRTGATTAILAAVLFGLSTPLAKLLVHDLSPWMLAGLLYLGSGIGLGLVRLLRLLTGSR
KRSERGLRGAEWFWLLTAVAAGGIAGPVLLMFGLTATPASTASLLLNLEGVFTALLAWFV
FREGVDRRLIAGMIAIVAGAVVLSWGRAVSLDGGWGPAAVAAACLMWAADNNLTRKVSLA
DPADIATIKGLVAGTVNVGIALALGDGLPAVPTAAAAMLVGLLGYGVSLVLFVVALRHIG
AARTGAYFSTAPFVGGIASLAIFGEPLTVGLAAAAALMGLGVWLHLTEDHDHEHDHEEME
HDHPHVHDEHHRHHHDGPVTEPHTHRHRHVRLRHRHAHFPDAHHAHRH