Protein Info for AZOBR_RS00060 in Azospirillum brasilense Sp245

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 111.9 bits, see alignment E=5.7e-36 PF17912: OB_MalK" amino acids 235 to 284 (50 residues), 43.9 bits, see alignment 5.6e-15 PF08402: TOBE_2" amino acids 277 to 347 (71 residues), 46.8 bits, see alignment E=4e-16

Best Hits

Swiss-Prot: 62% identical to UGPC_PARDP: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Paracoccus denitrificans (strain Pd 1222)

KEGG orthology group: K05816, sn-glycerol 3-phosphate transport system ATP-binding protein [EC: 3.6.3.20] (inferred from 82% identity to azl:AZL_006710)

MetaCyc: 54% identical to polyol ABC-type transporterATP-binding component MtlK (Pseudomonas fluorescens)
7.5.2.M2 [EC: 7.5.2.M2]; 7.5.2.M2 [EC: 7.5.2.M2]; 7.5.2.M2 [EC: 7.5.2.M2]

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.20 or 7.5.2.M2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AE57 at UniProt or InterPro

Protein Sequence (357 amino acids)

>AZOBR_RS00060 sn-glycerol-3-phosphate ABC transporter ATP-binding protein (Azospirillum brasilense Sp245)
MATVDLNQVRKSYGAVEAIKGIDISVADGEFLVLLGPSGCGKSTLLRMVAGLESITGGEI
AIGGRVVNGLEPKDRDIAMVFQNYALYPHMSVFDNMAYGLKIRGLPKAEIQARVAKAAEI
LELNRFLDRRPSQLSGGQRQRVAMGRAIVREPAAFLFDEPLSNLDAKLRTQMRVEIKRLQ
DRLGITSLYVTHDQVEAMTLADRILVMNHGVAEQVGTPLEVYQRPASLFVAGFIGSPPMN
VLDARFDGAGQAVALPGGTAFLLPRPRPDMAGRPVKLGVRPEHLAVTPGHGPLIVTVDXV
EALGADTVVYGRLPDGEGMVVRVAGLPFCREGETLRVGAPPDALHLFDAETGRRLAD