Protein Info for AO356_30250 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 96 to 118 (23 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 155 to 173 (19 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 240 to 257 (18 residues), see Phobius details amino acids 269 to 291 (23 residues), see Phobius details amino acids 329 to 350 (22 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 18 to 171 (154 residues), 129.1 bits, see alignment E=6.6e-42 amino acids 198 to 349 (152 residues), 138.2 bits, see alignment E=1.1e-44 PF05145: AbrB" amino acids 43 to 349 (307 residues), 294.4 bits, see alignment E=4.5e-92

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 98% identity to pba:PSEBR_a2068)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WAA3 at UniProt or InterPro

Protein Sequence (360 amino acids)

>AO356_30250 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
LSSSARFSLHAYPAPFKWLALALVAGAAGQLLKFLGVPAGQFLGPMMVAIVFGTFGAGIQ
LHPYAFKLGQGCVGILAAHSMTLAVLLSIAQSWPMMLLATAATVCLSALVGLALVWAGIP
ASTAAWGTAPGAASAMVSMADEYGADSRVVATMQYVRVVCVVMIGALVSHWVGAPTGGET
HVTNVEPQSFGLLNLGLTIATLLAGVALGNRVPAGALLMPLLLGGALQISGLLHIALPDW
LLATAYGALGCYVGLRFDRPTIGYVWRRLPAMIMGATLLIALCALSAWLLATISDRDFLS
IYLATSPGGLDTMAIIAVDTHSDVGLVLAMQTLRLFAVILTGAFVARLIIRLSEHRQITS