Protein Info for AO356_30140 in Pseudomonas fluorescens FW300-N2C3

Annotation: fatty acid desaturase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 51 to 69 (19 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 115 to 132 (18 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details PF00487: FA_desaturase" amino acids 77 to 318 (242 residues), 144.7 bits, see alignment E=2.2e-46

Best Hits

KEGG orthology group: None (inferred from 87% identity to psp:PSPPH_2339)

Predicted SEED Role

"probable hydrocarbon oxygenase MocD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X6E9 at UniProt or InterPro

Protein Sequence (362 amino acids)

>AO356_30140 fatty acid desaturase (Pseudomonas fluorescens FW300-N2C3)
MSQDNTASTRDYRLTGPEAARAAEKGLVSASWYQSPISRQRMKQLMQRRDGPALLDTAIW
LLALLITGFGGYWFWGTWACVPFFLAYGVLYATASNPRWHESGHGTAFKTRWMNDALYQV
ASFMCMFEPHVWRWSHARHHTDTIVVGRDPEIVEPRPPSLFMMLLSLFQIPLLLKTMGGV
CRHAVGKMDAQEQTFIPESEWPKVFLAARIWLVIYAVVFGAALYLHSWLPLMYIGLPILY
GGWLSYLFGLTQHVGLAEDVLDHRSNCRTIYMNRVLRFLYMNMNYHLEHHMYPMVPYHAL
AQLHEEIRHDCPPPYANIGEAFKEIIPTLLKQRKDPTYFVRRPVGSPRPATDAHPQAEAT
LG