Protein Info for AO356_30055 in Pseudomonas fluorescens FW300-N2C3

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 106 to 133 (28 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 352 to 372 (21 residues), see Phobius details amino acids 415 to 441 (27 residues), see Phobius details amino acids 461 to 482 (22 residues), see Phobius details amino acids 488 to 507 (20 residues), see Phobius details amino acids 538 to 558 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 23 to 474 (452 residues), 239.9 bits, see alignment E=5.4e-75 PF00324: AA_permease" amino acids 33 to 439 (407 residues), 48.7 bits, see alignment E=4.9e-17

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2329)

Predicted SEED Role

"Amino acid permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WA67 at UniProt or InterPro

Protein Sequence (559 amino acids)

>AO356_30055 amino acid permease (Pseudomonas fluorescens FW300-N2C3)
MEATTFEAVPQAASSVGSLHRKIDWRGAFWVASGVPALVLFSIGAIAATVGKPAWIVWIV
SILFGFIQAFTYAEIAGLFPHKSGGASVYGAVAWVRYSKLIAPVSVWCNWLAWSPVLSIG
SGLAAGYILTALFPADALINTWQLTLLDLGWIKSGLSLRINATFAIGLLILLTVFAVQHG
GILRSARLTLVLGVTSLIPLLLVGVVPLFTGDSAQANFLPLYPLAHDAAGQVIDGPWDMS
GWSLMAGGLFMAAWSTYGFETAVCYTREFKDPKRDTFKAIFYAGLLCILVFTLVPLAFQG
SLGLGQLVTPAVLDASGAVVTPAVYSGLLSPAIYSGMGVGQVMADSIGGGKLVANIVLIM
LVLATLLAIMTSMSGSSRTLYQASVDGWLPKYLGRTNEHGAPTAAMWTDLSFNLLLLLMS
DYVFVLAASNVSYIIFNFLNLNAGWIHRLDRPDWIRPYKAPTVLLVAGGVLSFVNLACMG
LGADIWGAGTLMTGLLLALLILPVFCYRHYVQDKGRFPETMLSDLYIQTDAGQKRAGWLP
YATLIAGVLVVYGCHQLVA