Protein Info for AO356_29430 in Pseudomonas fluorescens FW300-N2C3

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1240 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 421 to 441 (21 residues), see Phobius details PF00672: HAMP" amino acids 444 to 492 (49 residues), 34.6 bits, see alignment (E = 4.8e-12) PF00512: HisKA" amino acids 552 to 618 (67 residues), 56.2 bits, see alignment 7.4e-19 PF02518: HATPase_c" amino acids 665 to 776 (112 residues), 103.8 bits, see alignment E=1.9e-33 amino acids 1124 to 1233 (110 residues), 63.7 bits, see alignment E=5.3e-21 PF00072: Response_reg" amino acids 839 to 950 (112 residues), 92.9 bits, see alignment E=3.8e-30

Best Hits

KEGG orthology group: None (inferred from 91% identity to pba:PSEBR_a2185)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X6P1 at UniProt or InterPro

Protein Sequence (1240 amino acids)

>AO356_29430 histidine kinase (Pseudomonas fluorescens FW300-N2C3)
MSTFKPATDRPIAVRIGLAVAALVFLMLAVSLVNLYGLRGMVRAVDSASHSAEILASVNG
ATGRVENFIATRDQESLSQAEGMVATAIAGLSAIAVAEAQSLKGSLERLAMAIAALRAAS
LAMDGETENMTAHYGRMREATILVEQGIANGLKGLESRTAEHEARVSDIESAHRILDILR
NGERIITANVARMLVSGDGATATAARNASAALRPVVEQLRELMGAPQEREALDQLAAALD
AASLAVEHLGESPRLRGGEALRYLAGVGDTVERLEAMLGEVEGHVVHDASDIQAATGLLQ
NAAALSKRFAERVATLEAQTLSFRLSPSAEVAGSVGHILDELSRLSRVLPASVGLQAKAT
PLTVSEQIAGYRAAFARFHQASNALSDARDQVRNEARSAGLLVARFAGQARSDALVHNDR
GMLATIVAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLNAEIASAGRGDEIG
IMTRAVRVFQENALRIRVLEAEADAERQQVQASLERMVAERTDTLHHQTEVLEAQAIELI
QARNQAETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATTPPADWHVQIDRAQRNAL
RLMNRVNDILDFSKAEAGKFELCPTPIDLNKVVGVLAEDAAMVAEGKGCTLTCSIDPALG
TVFLDPQHFEKILLNLVSNAIKFTPAGGTVHLAVTPLDGERFELAVQDSGIGIAPDKLPL
LFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVNSEPGRGSCFFVRLPLGTEPN
TVPTEAGTMHERSSSSTTSTAEQRHLRFDDGRLGSRNDRVSIQDADDEQPPGHASRSRVL
VVDDSPEMLGYLSELLRADYIVATATDGEQAWALLQLRPIDVVVSDVMMPKLDGFGLTAR
IKASAGFAHLPVILVTARGGSEACVSGLESGADDYIAKPFSPLELKARVRAALRMSQVQT
ELHAKSRQAGMAEIATTVLHNVGNVLNSVNVSAELVSSQMRTSKAQGLGKVAQLMNEHVH
DLSDFLTNDHKGKMLPDYLLKLAGVVAAEQQSIIEELGQLTKGIDHIKTIVAAQQSYAVA
VSIVETVPVAELIDDALRMSAGLLARQEVTMVKDIADLPLLPLDRHRVLLILVNLIGNAK
QALDGVIDRSPCVTFSASLVDGAVLRITVADNGNGIAPEHMKRIFSHGFTTRKDGHGFGL
HSCALAAQEMGGSLTVHSDGVGQGATFTLDIPLGASLSKR