Protein Info for AO356_29250 in Pseudomonas fluorescens FW300-N2C3

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 transmembrane" amino acids 137 to 156 (20 residues), see Phobius details PF12625: Arabinose_bd" amino acids 26 to 204 (179 residues), 127.6 bits, see alignment E=9.5e-41 PF12833: HTH_18" amino acids 255 to 332 (78 residues), 74.7 bits, see alignment E=9.2e-25 PF00165: HTH_AraC" amino acids 295 to 332 (38 residues), 32.2 bits, see alignment 1.3e-11

Best Hits

KEGG orthology group: None (inferred from 61% identity to bph:Bphy_4913)

Predicted SEED Role

"transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X6K1 at UniProt or InterPro

Protein Sequence (341 amino acids)

>AO356_29250 AraC family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
VLAQDKGTTSISLVHEALEGALRRQLDTAGVLQQARIDPELLTSPQARVSAAAFSRLWVA
LSDLLDDEFFGIDSHPMRRGSFRLMCQASIGSTSLEQALHRILKFLRLVLDDIYGELMFD
GDCAVIVIHDRGVERRLFSYGTWLILVHGLLCWLGNRRIPIQTLCFRPSRPADDSDYRMR
FCEDIQFDAPTSRVRFDRSYLNLRVVQTQATLSTFMKESPASLLVKYRNEDSISVQVRMR
LRGLDPEQWPELDKLAKVLGMSYSTLQRRLQAEGISYQRLKDNLRRDMAINLLCQPDMTV
MEVAALTGFQESSAFHRAFKKWTGVSPGAYRRSNADDSSEG