Protein Info for AO356_28840 in Pseudomonas fluorescens FW300-N2C3

Annotation: iron-siderophore ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details amino acids 210 to 229 (20 residues), see Phobius details amino acids 260 to 284 (25 residues), see Phobius details amino acids 298 to 317 (20 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details PF01032: FecCD" amino acids 32 to 346 (315 residues), 278.8 bits, see alignment E=2.6e-87

Best Hits

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 71% identity to smk:Sinme_4468)

Predicted SEED Role

"Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1)" (TC 3.A.1.14.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WPW6 at UniProt or InterPro

Protein Sequence (353 amino acids)

>AO356_28840 iron-siderophore ABC transporter permease (Pseudomonas fluorescens FW300-N2C3)
MTSLNETLVMQRDTYRRLVLRKRLILGGLTLLLICSVLLDLALGPARYSLDEVLGALFSP
DSASPQVRVVMWDIRLPVALMAVAVGAALSLAGAQMQTILNNPLASPFTLGISAAASFGA
AMGLAFGVALFPLAAQYMVPVNAFIMAMLSALLIHFLSLRRGVTAETIVLLGIALVFTFN
ALLALVQFFATEQAVAAVVFWTMGSLTKATWPKLGVICLVILVTLPVFARRAWALTALRL
GDDKAASFGINVRSLRFQTLIMVSLLASFPVAFVGTIGFIGLVGPHIARMLIGEDQRFFL
PASVLTGALILSASSVISKTLIPGAIFPIGVVTSLIGVPFFISLILGGKKNSW