Protein Info for AO356_28725 in Pseudomonas fluorescens FW300-N2C3

Annotation: RND transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 36 to 372 (337 residues), 277.5 bits, see alignment E=6.2e-87 PF16576: HlyD_D23" amino acids 59 to 289 (231 residues), 38 bits, see alignment E=2.2e-13 PF13533: Biotin_lipoyl_2" amino acids 61 to 108 (48 residues), 27.3 bits, see alignment 4.8e-10 PF00529: CusB_dom_1" amino acids 163 to 357 (195 residues), 26.2 bits, see alignment E=1.2e-09 PF13437: HlyD_3" amino acids 171 to 287 (117 residues), 26.5 bits, see alignment E=1.7e-09

Best Hits

Swiss-Prot: 47% identical to ACRA_ECO57: Multidrug efflux pump subunit AcrA (acrA) from Escherichia coli O157:H7

KEGG orthology group: K03585, membrane fusion protein (inferred from 96% identity to pba:PSEBR_a2336)

MetaCyc: 47% identical to multidrug efflux pump membrane fusion lipoprotein AcrA (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-1551; TRANS-RXN-1552; TRANS-RXN-354; TRANS-RXN-355; TRANS-RXN-356; TRANS-RXN-357; TRANS-RXN-359; TRANS-RXN-360; TRANS-RXN0-592

Predicted SEED Role

"RND efflux system, membrane fusion protein CmeA" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WPV3 at UniProt or InterPro

Protein Sequence (389 amino acids)

>AO356_28725 RND transporter (Pseudomonas fluorescens FW300-N2C3)
MSKIPFVTLGLLVGALLLSGCDSASNPQASAPLASVRVETVQARPLSISNELSGRIAAPR
VAEVRARVAGVVLQRVFHEGRDVKQGEVLFRIDPAPFKADLDSAEAALRKAEANAFQARL
QAQRYAQLIDDKAISGQDYDNARANVRQTAADVAANKAAVERAKLNLGYATVTAPISGRI
GRALVTEGALVGQNESTPLALIQQLDPIHADLTQSTRELNDLRRAFRAGQLQAVGQGQAK
ATLIQDDGSPYPLPGKLLFTDLSVDPSTGQITLRSEFPNPDLDLLPGSFIRVRLEQAVNS
QGITVPQRAILRDSAGIAQVLLLDAEQKVSQQPVQLGAAQNDRWVVTHGLKPGDRIVIEG
LQHARPGEHVRIDDSPLPLAQVPGPQAGH