Protein Info for AO356_28715 in Pseudomonas fluorescens FW300-N2C3

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 19 to 45 (27 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 92 to 117 (26 residues), see Phobius details amino acids 137 to 153 (17 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details amino acids 238 to 260 (23 residues), see Phobius details amino acids 296 to 321 (26 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 375 to 399 (25 residues), see Phobius details amino acids 414 to 433 (20 residues), see Phobius details amino acids 443 to 464 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 25 to 432 (408 residues), 89.1 bits, see alignment E=3.2e-29 PF00324: AA_permease" amino acids 46 to 468 (423 residues), 79.3 bits, see alignment E=2.6e-26

Best Hits

KEGG orthology group: None (inferred from 99% identity to pba:PSEBR_a2338)

Predicted SEED Role

"Amino acid transporters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H360 at UniProt or InterPro

Protein Sequence (482 amino acids)

>AO356_28715 amino acid permease (Pseudomonas fluorescens FW300-N2C3)
MSVSFPISSSTELKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLLLA
LLVLLAFSAGYTAMSRHMTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFG
GVVSGTMASVFGLDLPWWTYSLLAMASIAILGYRKIDLSARVLSVVVIAEYLAILTLDFA
ILKTGGDSGINLDSFDRSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEARNPHRTIPIAT
YSSVLLIGGFYALSVWAMVVGVGADKIVPTLQALQDPTTFIYGMSDHFVGPHLTQIIRVL
FMVSIYAGLLAFHNAAARYFYAIGRDGLLHSRLGTTHRVHQSPHMGSVLQSLIAAVVVLI
FAALDADPILQLFAWFSNLATLCVILLMALTSAAVWVYFRSHPELKLGLWRGRILPGFSC
LALLAVLALAVMHFDVLTGASQLLSYGLCAVIPAALIVGVFLAARLRKSSPERFMALGSH
KL