Protein Info for AO356_26400 in Pseudomonas fluorescens FW300-N2C3

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 PF00126: HTH_1" amino acids 4 to 61 (58 residues), 70.4 bits, see alignment E=9.7e-24 PF03466: LysR_substrate" amino acids 87 to 285 (199 residues), 113.1 bits, see alignment E=1.2e-36

Best Hits

KEGG orthology group: None (inferred from 98% identity to pba:PSEBR_a2924)

Predicted SEED Role

"Cyn operon transcriptional activator" in subsystem Cyanate hydrolysis or DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X3L3 at UniProt or InterPro

Protein Sequence (315 amino acids)

>AO356_26400 LysR family transcriptional regulator (Pseudomonas fluorescens FW300-N2C3)
MNLKFLETFVWVARLQSFSLTAEKMFSTQAAISSRIASLEEELGLRLFVRDSRGVSLTPE
GLKVLDYAQQMLDVQRALKQSLDTSSPQQGLVRIGVMDTVIHTWLSPLMSMLMQAFPAVE
IEITADAARNLCEQLQKGYLDIVFQTDLVRHESVRNLELGHYPMHWIAASQSIYARPYGS
LAEMASERIITFVKHSRPHQDVLNLLYAHGVSAPRVSCVNSVSAMTRLIRDGFGIGALPA
ALVAKPLASGELIPLEPGIALPQLDVVASWRAGVGLELIENIVQMSRQVVSQYAVDVGPL
RMVAAPGLNSQAPLE