Protein Info for AO356_26270 in Pseudomonas fluorescens FW300-N2C3

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF07730: HisKA_3" amino acids 189 to 256 (68 residues), 53.2 bits, see alignment E=3.6e-18 PF02518: HATPase_c" amino acids 294 to 388 (95 residues), 46.7 bits, see alignment E=4e-16

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a2953)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9XF32 at UniProt or InterPro

Protein Sequence (394 amino acids)

>AO356_26270 histidine kinase (Pseudomonas fluorescens FW300-N2C3)
MQSPPHDPGSALAIRSQYRQSQSRAARLGLLLGTGHELTQLPLPAMRQRALQRACAFMAM
DHGLLLEWAPDHTLRTLASHGSAERVDFLANLAQPQTPGPNWLESPGSALPQVLRIPLRT
SDGVTFGALLLGNSVALGAPDNEDIESLQLLATLLAAHLENSRLVEALQARERTMSELVH
RLFSAQEDERKRVAYDLHDGLAQNLAGLHQRLQGFAGRCPSLAPALASELQAILDLAQGC
VGEGRQLIGGLRPHVLDDFGLYKAVDKEADRLRDAGLTVSWAEHSSARLPGNTEIALFRI
AQEGINNILKHAQARHVGLGLAVEDGHASLRVEDDGRGFALEQPIETNGSCHLGLAAMQE
RANLLGGHLACCSQPGGGTRLLASVPLPSAGVQP