Protein Info for AO356_26260 in Pseudomonas fluorescens FW300-N2C3

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 770 transmembrane" amino acids 18 to 38 (21 residues), see Phobius details amino acids 187 to 209 (23 residues), see Phobius details PF05227: CHASE3" amino acids 47 to 178 (132 residues), 68.9 bits, see alignment E=1.5e-22 TIGR00229: PAS domain S-box protein" amino acids 265 to 390 (126 residues), 71.6 bits, see alignment E=3.2e-24 PF00989: PAS" amino acids 270 to 381 (112 residues), 35.5 bits, see alignment E=3e-12 PF08448: PAS_4" amino acids 282 to 386 (105 residues), 34.4 bits, see alignment E=7.9e-12 PF13426: PAS_9" amino acids 282 to 383 (102 residues), 45.6 bits, see alignment E=2.5e-15 PF00512: HisKA" amino acids 404 to 468 (65 residues), 68.9 bits, see alignment E=1.1e-22 PF02518: HATPase_c" amino acids 516 to 624 (109 residues), 105.9 bits, see alignment E=5.9e-34 PF00072: Response_reg" amino acids 650 to 759 (110 residues), 67.4 bits, see alignment E=4.4e-22

Best Hits

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a2955)

Predicted SEED Role

"Sensory box histidine kinase/response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9X6H7 at UniProt or InterPro

Protein Sequence (770 amino acids)

>AO356_26260 histidine kinase (Pseudomonas fluorescens FW300-N2C3)
MRFLAARRWADLPLRGKALVVISLPLVVLLLSLVLIYITERQTARAEEDVRRVLLVQGDI
QTVHTLLAEAAASVRGYLLTRREDFLPSYEQATPLIRAALQRLDHNIRDARMREHLKTIT
PLIADKLDGLLALRNGKRDDPEAITAILIENKQVLDVLREQISAMRIREDGLLAERSAAA
SATRMRLLFATLLAAVCGLLGAIVAVLFLSKGIVARVQQVQGNAQRLALGQPLLPQPPEQ
DEIGQLGTRLVEAGQLLAERERALRDNEERLRLIIDGVKDYGIFALDAQGYVTTWNAGAQ
RIKGYTEQEILGQHFSLFYLPEECPAHPDMALREATRDGHYMEEGWRCRKDGSRFWASVV
ITAQYDGTGALRGFSKITRDITDRRAAEIALRTAREEAESASRAKSEFLSRMSHELRTPL
NAILGFAQLLDMDSTAGQRPQVSHILRAGQHLLALINEVLDIARIEAGRLPLNIEPIPLA
TVLHEALTLVSPMAADAGIHLIDLPALPDDSGVLADRQRLVQVLLNLLSNAIKYNRPGGE
VRIEVSVQAHQVSIAVHDTGHGIAPEQLGQLFKPFERLGADPQVEGTGLGLSLSKNLLEM
MQGNLQVHSEPGHGCCFTLQLPATQVVGTHLPPIAALAVTRTPVDYHGKILCIEDNLSSL
ALIETLMQRRPGIQLLSSMQGQMGLDLARQHSPQLILLDVTLPDLEGLEVLRRLRQSPAT
AATPVLMITADASDLTHRALRDAGATAILTKPIHIQAFLGHLEHYLPEPA