Protein Info for AO356_26170 in Pseudomonas fluorescens FW300-N2C3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1707 transmembrane" amino acids 429 to 451 (23 residues), see Phobius details amino acids 472 to 492 (21 residues), see Phobius details PF20178: DUF6543" amino acids 48 to 312 (265 residues), 134.7 bits, see alignment E=6.8e-43

Best Hits

KEGG orthology group: None (inferred from 70% identity to pba:PSEBR_a2972)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNS0 at UniProt or InterPro

Protein Sequence (1707 amino acids)

>AO356_26170 hypothetical protein (Pseudomonas fluorescens FW300-N2C3)
MSTLDTHVEFIQARLPAWLKRAPRPQQERFRVLTRQLQHDSDALNALLKDLPTPYAFTLD
LLKEQPQVQGWSQVNGRGDVADALRRARVRRSSFVTDPALSVVEAAMRNYPPDDAVTGSA
FDRKGELFIKGKPGEFYRWGAPADTAPLPMTPASFARLCRSVDVGGAYRRSLEWRLPRIG
HQVPIVATAYMAYARSQLAYDAYEAKLDGRLDNTGERLLAHVGVQLEDRPVAPLACEVKA
LALLSAPLFGVRVYWGLEGDANGVRPIVLHMPHDAVAPLKQFPSLQALSAELTERVRKRS
YRQTLLRYLPLRLQASLGSALHDQVEWKVTDNLNLFQEIHARITGWREGERGEDDNPRRI
RIPTPKVAWGLDDLREDPWHSTYHEWRGHTLANASALMVPTRDQDWRALLARLEYWEGLV
ERSLMVAATFFPFCAPVGMVAAAVGGVRLVYEIFEGIQAFNEGHAQEGIEHIFNALFGVA
QGAYLGFIGAAIEPMPVADGTTRLWNGDVRAFEAQRLPPVEAEQDAWGVWRTADEAWVWI
EDRYFEVQGTRDKVNLRLPPGHRGVAPPLEWNRTRGWQWAHRNPLQRSGLELLRTFAETP
AELDDSTILALQRQVGISEAHLRYLQVEARPMPAILADALDEVRNWQWVRRTIERLRRGE
APQGMHFRIVQTLVELPGWPEDMTLRYHDGVNLYPVGDTADTRSILLTKTDLAHDAWAAR
ILEGLSSDEQTVLLGQSSIGLQPLEQSRLLASRWATRLERDARRVTMAMGRSTRLDPLAV
PLVQAFPSLPESIANELVRDVTGKDRLRLLEGRVAGDLGRRAAEALRELRLSRALRALER
GESSVDRDRIVMGLLADMPRLRGRLHLRLWLRELADPVELGDAGPLKVIRQEGELYRPFD
ETGEELANAVALEAALLSAMPDEARSALGLNIWEADRLRSQLLAQALEDRQALRPYLAMR
RLGSLGSRPQWLNGHLVYPLSGRGRLPLQEWQGSTRQRLERLYPAHAGNALERLQLGLTE
QAGLEGISLNDVITRLEHEWTTLDQGLRQWVDQEGFHHPAEQILDREALVAQRQVIAREI
RRAWQRAPDPGREGAELVLRIENINVGRLPPVNVRFEHIESVVLANLELVEDPSDFLRMF
PGIESLSLRGNHLTAVPVAVTELRALVDLSLARNPLHLNAEVFAPLLGDDPTIPLWTLDL
SGISSGAASGTNAEVLAAIGSLASLPSLREVIWADNLDFTPEQLQALTATLPDLRALNLA
RCGLRLDEEGSTFLRSATALQELRLSGNNCRDLPELPELANLMTLELGRTGLDRVPSLAL
AVLARHSDVFISDTFVVDLSGNRITSIQDDLLPALNRLPSLDTLGVWLDDNPLPSAQINA
LRNVFPEAFRYTVDEWLYISASLQRALEVARDDPGMRGFIDWFSGRVREADEDSPAGLAF
GVRQRAGAVLQHFIGYGNVYGRLPTLIGDFDVQLRQLRTRLQIRSQDRQQPDIGELELHF
TMFESVMRARLARDGAPFSSFLAEHLSHWDFALMDRFIDPVQRQAQMSREAFIDWLSDAQ
DTFNSNDQTPRTGEMTWRPYLGLMSRDWPEGLAIWETVDDDLVNAFSEPIDPSRWPQVML
DNLVSPDPELPSPLEPVTEGERIVWRRAGLEAVADVDWRGGQPVTLNEDQLRRTMAIYRS
VKSREVEALVRRVTRSLVTAWWPVLPL