Protein Info for AO356_26160 in Pseudomonas fluorescens FW300-N2C3

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 49 to 68 (20 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 107 to 131 (25 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 274 to 297 (24 residues), see Phobius details amino acids 309 to 327 (19 residues), see Phobius details amino acids 333 to 352 (20 residues), see Phobius details amino acids 361 to 385 (25 residues), see Phobius details amino acids 397 to 417 (21 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 383 (364 residues), 155.2 bits, see alignment E=1.1e-49

Best Hits

Swiss-Prot: 43% identical to TUB3_AGRVI: Putative tartrate transporter (ttuB) from Agrobacterium vitis

KEGG orthology group: None (inferred from 97% identity to pba:PSEBR_a2974)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N7H300 at UniProt or InterPro

Protein Sequence (431 amino acids)

>AO356_26160 MFS transporter (Pseudomonas fluorescens FW300-N2C3)
MKTLPVSVLAKISWRLLPFLLLMYIMAFLDRANVGFAKQAFQADTGIGDAAFAFGAGVFF
AGYALLEVPSNLILHRVGARLWMCRIMVTWGLVSAAMVFAHNETSFYVLRFLLGVAEAGF
FPGVILYLTYWFPSAARGKAMGFFYFGAPLAFIFGSPLSGLLLELDGFVGVHGWQWLFAV
EGLMASAVGVWAYWYLDNRPADAKWLTLEERRQVQELLDAEDQHKQSHGRSLLSVLCQPS
VLYLCLIYLLIQASVYGVVFYLPSQVAGLLGSKVGLLVGLVTAIPWVCALCAAYLIPGYS
DRTGQRRRTATLTLLMAAAGIACSVSVSSPLLGIIALCFAASGFIAVQPVFWTFPSSYLA
GSAAAAGIALINSFGALGGFIAPVLKNWAEGAFHSPAAGLYLLAATTVIAALLVLGIHSP
GQRASNTPATV