Protein Info for AO356_25985 in Pseudomonas fluorescens FW300-N2C3

Annotation: autotransporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 819 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF18883: AC_1" amino acids 334 to 446 (113 residues), 102.4 bits, see alignment E=1.6e-33 TIGR01414: outer membrane autotransporter barrel domain" amino acids 352 to 819 (468 residues), 242 bits, see alignment E=6.4e-76 PF03797: Autotransporter" amino acids 549 to 796 (248 residues), 146.8 bits, see alignment E=1e-46

Best Hits

KEGG orthology group: None (inferred from 87% identity to pba:PSEBR_a3013)

Predicted SEED Role

"Outer membrane autotransporter barrel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9WNN8 at UniProt or InterPro

Protein Sequence (819 amino acids)

>AO356_25985 autotransporter (Pseudomonas fluorescens FW300-N2C3)
MIRHDKGFNRLFNALWVSAPFLLPAPAAMAACTLAPTAGNDTYVCDSGTSPGLTDLSGNN
SLTMPANGSGVITGDVTFGTGVDTLEINANGVIDGDVEQGSEADSFVMNGGRVLSLAQGD
GLDQFLMTGGTIVDAFEDGDIAKMTGGTIGRVDMKLDDNVFDMSGGNIIGNLVTGFGQDT
IILSAGRIGGNVSVSGGNDSITVSGGEILGEVRASAGDDQFQWSGGLIHSAILMGDGNDT
ALLSNLDEAGLSITPSVNGGLGQDILTFEGSTSSTGARYLNWETVNLTQGSQLDLNDTLT
LGDSATGTGTLNIESGSTLTATQGVIAPFTAGQLATLNNAGTIDLTQGNTRTNDTLTVQG
NYVGNNGQLHVQTAVGADGSASDKLVVNGGTLTGNTAITVTNLGGTGAQTTQDGIEVVQA
QGGAVSNIDAFSLAQSVSAGAFDYRLFKGGVSGNQNNWYLRSTVVAGPVAAPIPTVPPAP
GAPPVPTLPPLPTAVPGAAPIPLYRPEVPTWSVLPPAAAQLTLMALGTFHDRQGDQRLLT
ETGAFGAGWGRVYGVDLDKTWAGTVTPQFDGSIKGFQVGNDLYSSLLSGGQTQRIGFFVG
HTELNGNVKGFNLGFEGRRAGKIELDGDSYGLYWTLTDPNGGYVDAVVMGTRLNGDNRSE
RGLKIDNRGHALTASAETGYPFKVTTDWDFEPQAQIIYQKVSLDTQNDGVSKVEFDSDGA
WTGRLGARLKGRYQVSGMPVEPYLRANLWHTFSGTDSVIFDDTERVETQQRASTGDLGIG
VNVSLAPSVALYAGANYSQNLDSNQQHSVMGNVGFRISW