Protein Info for AO356_25540 in Pseudomonas fluorescens FW300-N2C3

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 PF01946: Thi4" amino acids 20 to 77 (58 residues), 28.8 bits, see alignment E=1.1e-10 PF01266: DAO" amino acids 30 to 384 (355 residues), 183.2 bits, see alignment E=1.6e-57

Best Hits

KEGG orthology group: K09471, gamma-glutamylputrescine oxidase [EC: 1.4.3.-] (inferred from 99% identity to pba:PSEBR_a2733)

Predicted SEED Role

"FIG00553873: hypothetical protein"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.4.3.-

Use Curated BLAST to search for 1.4.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0N9W8B7 at UniProt or InterPro

Protein Sequence (432 amino acids)

>AO356_25540 FAD-dependent oxidoreductase (Pseudomonas fluorescens FW300-N2C3)
MINIETPTYYTATKKYNLSFPTLEQDVEADVVVIGGGFSGINTALELAEKGITNIVVLEA
RYLGFGGTGRNGGQIMAGIGHDLEKIKKDVGEDGLRQVFEISDLGADIIKDRIAKYAIDA
DFCHGYGYMGFNARQEKTLRAWEKDFKSINSKHEIRFLGGSDVQQIIGSKAYSSALLHMG
GGHVHSLNLLLGEAKAVVSHGVRIFENSPALEVSYGERITVRTGRGSVRASKLLWACDSF
LNKLEPELHRSTINTYAFQMMTEPLSDELIQRISPIRGAYSDIRPVIDYYRVTNENRLLF
GAATPLVEHIPQDLKAWNRRLMLKIFPYLKDVKIDLAWGGPMACSPNLFPQIGTLPGRSN
AFFVQGYSGFGVTPSHIICKVLAEGMSEGSARYDLVSSIHRPTIIGKDAIRPLLLTAGKS
WHQLSGYWNGRR